Variant report

Variant	rs56098084
Chromosome Location	chr6:29425093-29425094
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484548	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11961013	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11962004	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11964095	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966844	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966876	0.81[EUR][1000 genomes]
rs17177823	1.00[EUR][1000 genomes]
rs29264	0.91[EUR][1000 genomes]
rs3025660	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3025667	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs362539	0.82[ASN][1000 genomes]
rs362541	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs362542	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs362543	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55866912	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60695064	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61538888	0.82[ASN][1000 genomes]
rs61732184	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61732185	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6912636	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6935895	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73400921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401000	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73402766	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73402774	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73403336	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73403338	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73403363	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73403367	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73403369	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73403375	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73404743	0.91[EUR][1000 genomes]
rs73404745	0.91[EUR][1000 genomes]
rs73409596	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752486	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7757269	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461531	1.00[EUR][1000 genomes]
rs9461532	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9461533	1.00[EUR][1000 genomes]
rs9468546	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9468547	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9468550	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9501676	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29418400-29427400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:29423800-29426200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:29424800-29425800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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