Variant report

Variant	rs73403375
Chromosome Location	chr6:29396777-29396778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484548	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961013	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11962004	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964095	0.91[EUR][1000 genomes]
rs11966844	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17177823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3025660	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025667	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362539	0.90[ASN][1000 genomes]
rs362541	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362542	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362543	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55866912	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56098084	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695064	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61538888	0.90[ASN][1000 genomes]
rs61732184	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732185	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912636	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73400921	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73401000	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402766	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402774	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403336	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403367	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403369	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404743	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73404745	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73409596	1.00[ASN][1000 genomes]
rs7752486	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761746	0.83[ASN][1000 genomes]
rs9461531	0.91[EUR][1000 genomes]
rs9461532	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461533	0.91[EUR][1000 genomes]
rs9468546	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468547	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468550	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468559	0.81[ASN][1000 genomes]
rs9501676	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv965635	chr6:29395355-29402762	Enhancers Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29392600-29399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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