Variant report

Variant	rs73409596
Chromosome Location	chr6:29347591-29347592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr6:29347309-29347764	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
OR12D3	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484548	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961013	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964095	0.81[EUR][1000 genomes]
rs11966844	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11966876	1.00[EUR][1000 genomes]
rs3025660	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025667	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362539	0.90[ASN][1000 genomes]
rs362541	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362542	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362543	0.90[ASN][1000 genomes]
rs55866912	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56098084	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60695064	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61538888	0.90[ASN][1000 genomes]
rs61732184	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732185	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912636	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6935895	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73400921	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73401000	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402766	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402774	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403336	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403338	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403363	1.00[ASN][1000 genomes]
rs73403367	1.00[ASN][1000 genomes]
rs73403369	1.00[ASN][1000 genomes]
rs73403375	1.00[ASN][1000 genomes]
rs7752486	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757269	1.00[ASN][1000 genomes]
rs7761746	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461531	0.81[EUR][1000 genomes]
rs9461532	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461533	0.81[EUR][1000 genomes]
rs9468546	0.90[ASN][1000 genomes]
rs9468547	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468550	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9501676	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601215	chr6:28946920-29348297	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv1018937	chr6:28956136-29366175	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1020683	chr6:29225146-29353408	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv966676	chr6:29326915-29365789	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv883527	chr6:29342825-29354799	Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv519453	chr6:29343355-29351873	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1816721	chr6:29344395-29352943	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv601224	chr6:29344704-29356587	Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29347400-29348400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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