Variant report

Variant	rs61538888
Chromosome Location	chr6:29490669-29490670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29484816..29486671-chr6:29489047..29491131,2	K562	blood:
2	chr6:29490586..29492205-chr6:29493882..29496471,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484548	1.00[ASN][1000 genomes]
rs11961013	1.00[ASN][1000 genomes]
rs11962004	1.00[ASN][1000 genomes]
rs11964095	0.82[ASN][1000 genomes]
rs11966844	1.00[ASN][1000 genomes]
rs17177823	0.90[ASN][1000 genomes]
rs29264	0.90[ASN][1000 genomes]
rs3025660	1.00[ASN][1000 genomes]
rs3025667	1.00[ASN][1000 genomes]
rs362539	1.00[ASN][1000 genomes]
rs362541	1.00[ASN][1000 genomes]
rs362542	1.00[ASN][1000 genomes]
rs362543	1.00[ASN][1000 genomes]
rs55866912	1.00[ASN][1000 genomes]
rs56098084	0.82[ASN][1000 genomes]
rs60695064	1.00[ASN][1000 genomes]
rs61732184	0.90[ASN][1000 genomes]
rs61732185	0.90[ASN][1000 genomes]
rs6912636	1.00[ASN][1000 genomes]
rs6935895	1.00[ASN][1000 genomes]
rs73400921	0.82[ASN][1000 genomes]
rs73401000	1.00[ASN][1000 genomes]
rs73402731	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73402766	1.00[ASN][1000 genomes]
rs73402774	1.00[ASN][1000 genomes]
rs73403336	0.90[ASN][1000 genomes]
rs73403338	0.90[ASN][1000 genomes]
rs73403363	0.90[ASN][1000 genomes]
rs73403367	0.90[ASN][1000 genomes]
rs73403369	0.90[ASN][1000 genomes]
rs73403375	0.90[ASN][1000 genomes]
rs73404743	0.90[ASN][1000 genomes]
rs73404745	0.90[ASN][1000 genomes]
rs73409596	0.90[ASN][1000 genomes]
rs7752486	1.00[ASN][1000 genomes]
rs7757269	0.90[ASN][1000 genomes]
rs9461532	1.00[ASN][1000 genomes]
rs9468546	1.00[ASN][1000 genomes]
rs9468547	1.00[ASN][1000 genomes]
rs9468550	1.00[ASN][1000 genomes]
rs9468559	0.90[ASN][1000 genomes]
rs9501676	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29490400-29491400	Weak transcription	Liver	Liver

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