Variant report

Variant	rs73404743
Chromosome Location	chr6:29556692-29556693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484548	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11961013	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11962004	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11964095	0.91[EUR][1000 genomes]
rs11966844	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17177823	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs29264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025660	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025667	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362539	0.90[ASN][1000 genomes]
rs362541	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362542	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs362543	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55866912	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56098084	0.91[EUR][1000 genomes]
rs58349531	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60695064	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61538888	0.90[ASN][1000 genomes]
rs61732184	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61732185	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6912636	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6934884	0.91[EUR][1000 genomes]
rs6935895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73400921	0.91[EUR][1000 genomes]
rs73401000	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402766	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73402774	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403363	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73403367	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73403369	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73403375	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73404745	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73404772	0.91[EUR][1000 genomes]
rs7752486	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757269	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9461531	0.91[EUR][1000 genomes]
rs9461532	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461533	0.91[EUR][1000 genomes]
rs9468546	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468547	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468550	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9468559	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9501676	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv5239	chr6:29527407-29566446	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv519288	chr6:29545715-29559295	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29546200-29569400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:29554400-29559800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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