Variant report

Variant	rs7752486
Chromosome Location	chr6:29492563-29492564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10484548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964095	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966844	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177823	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs29264	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3025660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3025667	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs362541	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362542	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs362543	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55866912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56098084	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60695064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61538888	1.00[ASN][1000 genomes]
rs61732184	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61732185	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6912636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400921	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73401000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403336	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403338	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403363	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403367	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403369	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73403375	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404743	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404745	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73404772	0.81[EUR][1000 genomes]
rs73409596	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7757269	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468559	0.90[ASN][1000 genomes]
rs9501676	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv966616	chr6:29479346-29495253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29491400-29493200	Enhancers	Liver	Liver
3	chr6:29492000-29493000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:29492000-29493200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:29492200-29492800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:29492200-29492800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:29492200-29493000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:29492200-29493000	Enhancers	Pancreas	Pancrea
9	chr6:29492400-29492600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:29492400-29492600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:29492400-29493600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:29492400-29493600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:29492400-29493600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:29492400-29493800	Enhancers	H9 Cell Line	embryonic stem cell

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