Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10962276	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000112	0.81[EUR][1000 genomes]
rs12005226	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1887679	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891006	0.88[EUR][1000 genomes]
rs4961659	0.85[EUR][1000 genomes]
rs4961661	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61340625	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62552194	0.82[EUR][1000 genomes]
rs62552198	0.93[EUR][1000 genomes]
rs62552205	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7023221	0.87[EUR][1000 genomes]
rs7038330	0.85[EUR][1000 genomes]
rs7863779	0.85[EUR][1000 genomes]
rs7872656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943783	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs943784	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs943786	0.84[EUR][1000 genomes]
rs9695984	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16091600-16100200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16091600-16103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16092800-16100400	Weak transcription	NHLF	lung
4	chr9:16094200-16100200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:16098000-16101600	Enhancers	Fetal Lung	lung
6	chr9:16099200-16100800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:16099200-16107400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:16099400-16100200	Enhancers	HMEC	breast
9	chr9:16099400-16100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:16099400-16107000	Enhancers	Ovary	ovary
11	chr9:16099600-16100200	Enhancers	Brain Substantia Nigra	brain
12	chr9:16099600-16100600	Weak transcription	Right Atrium	heart
13	chr9:16099600-16101200	Enhancers	Brain Angular Gyrus	brain
14	chr9:16099600-16101200	Enhancers	Brain Cingulate Gyrus	brain
15	chr9:16099600-16101200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr9:16099600-16101600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:16099600-16101600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:16099600-16101600	Enhancers	Brain Hippocampus Middle	brain
19	chr9:16099600-16101800	Weak transcription	Pancreas	Pancrea
20	chr9:16099600-16104200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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