Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10962276	0.86[EUR][1000 genomes]
rs11999853	0.88[EUR][1000 genomes]
rs12000112	0.82[EUR][1000 genomes]
rs12000537	0.81[ASN][1000 genomes]
rs12005226	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12684961	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1887679	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4422862	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4961659	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4961661	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61340625	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62552194	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62552198	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62552205	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7023221	0.83[EUR][1000 genomes]
rs7038330	0.82[EUR][1000 genomes]
rs7863779	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7872656	0.88[EUR][1000 genomes]
rs943783	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs943784	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs943786	0.81[EUR][1000 genomes]
rs9695984	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16090800-16093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:16091000-16093400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16091000-16093800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:16091200-16092800	Enhancers	NHLF	lung
5	chr9:16091200-16093400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:16091400-16092600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16091400-16093600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:16091400-16094000	Enhancers	Fetal Stomach	stomach
9	chr9:16091600-16092800	Enhancers	Osteobl	bone
10	chr9:16091600-16093000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16091600-16093400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:16091600-16100200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:16091600-16103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:16091800-16092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:16092000-16092200	Enhancers	Colon Smooth Muscle	Colon
16	chr9:16092000-16092600	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:16092000-16093000	Enhancers	Muscle Satellite Cultured Cells	--

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