Variant report
| Variant | rs62552194 |
|---|---|
| Chromosome Location | chr9:16088547-16088548 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10962276 | 0.81[EUR][1000 genomes] |
| rs11999853 | 0.82[EUR][1000 genomes] |
| rs12000112 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12000511 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12000537 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12000547 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12005226 | 0.91[EUR][1000 genomes] |
| rs12684961 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1887679 | 0.82[EUR][1000 genomes] |
| rs2891006 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4422862 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4961659 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4961661 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs61340625 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs62552198 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62552205 | 0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6475005 | 0.80[EUR][1000 genomes] |
| rs7023221 | 0.85[EUR][1000 genomes] |
| rs7038330 | 0.84[EUR][1000 genomes] |
| rs7863779 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7872656 | 0.82[EUR][1000 genomes] |
| rs943783 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs943784 | 0.82[EUR][1000 genomes] |
| rs943786 | 0.82[EUR][1000 genomes] |
| rs9695984 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949463 | chr9:15970668-16377360 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv831521 | chr9:15974174-16106565 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2761506 | chr9:16040491-16093736 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3422593 | chr9:16087152-16091450 | Enhancers Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:16088000-16089600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
