Variant report

Variant	rs9695984
Chromosome Location	chr9:16092540-16092541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10962276	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11999853	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12000112	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12000511	0.84[ASN][1000 genomes]
rs12000537	0.86[ASN][1000 genomes]
rs12000547	0.82[EUR][1000 genomes]
rs12005226	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12684961	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1887679	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2891006	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4422862	0.83[ASN][1000 genomes]
rs4961659	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961661	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61340625	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62552194	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62552198	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62552205	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023221	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7038330	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863779	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7872656	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs943783	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs943784	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs943786	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16090800-16093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:16091000-16093400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16091000-16093800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:16091200-16092800	Enhancers	NHLF	lung
5	chr9:16091200-16093400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:16091400-16092600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16091400-16093600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:16091400-16094000	Enhancers	Fetal Stomach	stomach
9	chr9:16091600-16092800	Enhancers	Osteobl	bone
10	chr9:16091600-16093000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16091600-16093400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:16091600-16100200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:16091600-16103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:16091800-16092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:16092000-16092600	Enhancers	Stomach Smooth Muscle	stomach
16	chr9:16092000-16093000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:16092200-16092800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:16092200-16092800	Enhancers	Fetal Muscle Trunk	muscle
19	chr9:16092200-16093000	Enhancers	Placenta	Placenta
20	chr9:16092200-16093400	Enhancers	Ovary	ovary
21	chr9:16092200-16093800	Enhancers	Fetal Lung	lung
22	chr9:16092400-16092600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:16092400-16092800	Enhancers	Colon Smooth Muscle	Colon
24	chr9:16092400-16092800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:16092400-16092800	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:16092400-16093200	Enhancers	Right Ventricle	heart
27	chr9:16092400-16093400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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