Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10962276	0.84[EUR][1000 genomes]
rs11999853	0.85[EUR][1000 genomes]
rs12000112	0.85[EUR][1000 genomes]
rs12000547	0.82[EUR][1000 genomes]
rs12005226	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12684961	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1887679	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2891006	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422862	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4961661	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61340625	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62552194	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62552198	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62552205	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7023221	0.86[EUR][1000 genomes]
rs7038330	0.85[EUR][1000 genomes]
rs7863779	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7872656	0.85[EUR][1000 genomes]
rs943783	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs943784	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs943786	0.83[EUR][1000 genomes]
rs9695984	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3422593	chr9:16087152-16091450	Enhancers Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16090400-16091400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:16090800-16093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:16091000-16091600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:16091000-16091600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16091000-16091600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:16091000-16091600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:16091000-16093400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:16091000-16093800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:16091200-16091400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16091200-16091600	Enhancers	HSMM	muscle
11	chr9:16091200-16091800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:16091200-16091800	Enhancers	Fetal Intestine Large	intestine
13	chr9:16091200-16092800	Enhancers	NHLF	lung
14	chr9:16091200-16093400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:16091400-16091600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:16091400-16092600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:16091400-16093600	Enhancers	Fetal Muscle Leg	muscle
18	chr9:16091400-16094000	Enhancers	Fetal Stomach	stomach

Quick Search: