The 2.0 version of rSNPBase

Variant report

Variant rs12049352
Chromosome Location chr1:220144334-220144335
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220129200-220145800 Weak transcription HepG2 liver
2 chr1:220132800-220177000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:220137200-220145800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr1:220139200-220145400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:220139400-220146000 Weak transcription Colon Smooth Muscle Colon
6 chr1:220139400-220154000 Weak transcription Fetal Lung lung
7 chr1:220139600-220144600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:220140000-220144400 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:220140000-220146000 Weak transcription Psoas Muscle Psoas
10 chr1:220140000-220167400 Weak transcription Gastric stomach
11 chr1:220140200-220151800 Weak transcription NHLF lung
12 chr1:220140200-220157600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:220140200-220160000 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr1:220140400-220146000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:220140400-220154200 Weak transcription Esophagus oesophagus
16 chr1:220140600-220144600 Weak transcription A549 lung
17 chr1:220140600-220146000 Weak transcription Brain Angular Gyrus brain
18 chr1:220140600-220146200 Weak transcription Spleen Spleen
19 chr1:220140600-220162400 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr1:220140600-220162400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:220140600-220163000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:220140800-220144400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:220140800-220146800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:220140800-220146800 Weak transcription Fetal Heart heart
25 chr1:220140800-220147000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:220140800-220150000 Strong transcription Sigmoid Colon Sigmoid Colon
27 chr1:220140800-220150800 Strong transcription Left Ventricle heart
28 chr1:220140800-220161800 Strong transcription Fetal Thymus thymus
29 chr1:220140800-220162400 Strong transcription Fetal Intestine Large intestine
30 chr1:220140800-220162400 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr1:220140800-220163200 Strong transcription Primary T cells from cord blood blood
32 chr1:220140800-220164000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:220140800-220173400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:220140800-220192400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:220141000-220146400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:220141000-220146600 Strong transcription Duodenum Smooth Muscle Duodenum
37 chr1:220141000-220146800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:220141000-220146800 Strong transcription Liver Liver
39 chr1:220141000-220147200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:220141000-220149800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:220141000-220158000 Strong transcription Primary B cells from peripheral blood blood
42 chr1:220141000-220163000 Strong transcription HUES64 Cell Line embryonic stem cell
43 chr1:220141000-220163200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:220141000-220163400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:220141200-220144400 Strong transcription Osteobl bone
46 chr1:220141200-220147000 Strong transcription NH-A brain
47 chr1:220141200-220152000 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:220141200-220158200 Strong transcription Rectal Mucosa Donor 29 rectum
49 chr1:220141200-220162000 Strong transcription Adipose Nuclei Adipose
50 chr1:220141200-220162800 Strong transcription Duodenum Mucosa Duodenum

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015