The 2.0 version of rSNPBase

Variant report

Variant rs34309222
Chromosome Location chr1:220145946-220145947
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220132800-220177000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:220139400-220146000 Weak transcription Colon Smooth Muscle Colon
3 chr1:220139400-220154000 Weak transcription Fetal Lung lung
4 chr1:220140000-220146000 Weak transcription Psoas Muscle Psoas
5 chr1:220140000-220167400 Weak transcription Gastric stomach
6 chr1:220140200-220151800 Weak transcription NHLF lung
7 chr1:220140200-220157600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:220140200-220160000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr1:220140400-220146000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:220140400-220154200 Weak transcription Esophagus oesophagus
11 chr1:220140600-220146000 Weak transcription Brain Angular Gyrus brain
12 chr1:220140600-220146200 Weak transcription Spleen Spleen
13 chr1:220140600-220162400 Strong transcription Breast Myoepithelial Primary Cells Breast
14 chr1:220140600-220162400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
15 chr1:220140600-220163000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr1:220140800-220146800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:220140800-220146800 Weak transcription Fetal Heart heart
18 chr1:220140800-220147000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:220140800-220150000 Strong transcription Sigmoid Colon Sigmoid Colon
20 chr1:220140800-220150800 Strong transcription Left Ventricle heart
21 chr1:220140800-220161800 Strong transcription Fetal Thymus thymus
22 chr1:220140800-220162400 Strong transcription Fetal Intestine Large intestine
23 chr1:220140800-220162400 Strong transcription Monocytes-CD14+_RO01746 blood
24 chr1:220140800-220163200 Strong transcription Primary T cells from cord blood blood
25 chr1:220140800-220164000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr1:220140800-220173400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:220140800-220192400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
28 chr1:220141000-220146400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:220141000-220146600 Strong transcription Duodenum Smooth Muscle Duodenum
30 chr1:220141000-220146800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:220141000-220146800 Strong transcription Liver Liver
32 chr1:220141000-220147200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:220141000-220149800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:220141000-220158000 Strong transcription Primary B cells from peripheral blood blood
35 chr1:220141000-220163000 Strong transcription HUES64 Cell Line embryonic stem cell
36 chr1:220141000-220163200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:220141000-220163400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:220141200-220147000 Strong transcription NH-A brain
39 chr1:220141200-220152000 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr1:220141200-220158200 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr1:220141200-220162000 Strong transcription Adipose Nuclei Adipose
42 chr1:220141200-220162800 Strong transcription Duodenum Mucosa Duodenum
43 chr1:220141200-220163200 Strong transcription HSMM muscle
44 chr1:220141200-220192200 Weak transcription Fetal Kidney kidney
45 chr1:220141400-220146600 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr1:220141400-220146800 Strong transcription Brain Cingulate Gyrus brain
47 chr1:220141400-220150000 Strong transcription Skeletal Muscle Female skeletal muscle
48 chr1:220141400-220161800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:220141400-220162000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:220141400-220162200 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015