The 2.0 version of rSNPBase

Variant report

Variant rs12098052
Chromosome Location chr1:220142942-220142943
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220129200-220145800 Weak transcription HepG2 liver
2 chr1:220132200-220144200 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:220132400-220143200 Weak transcription Colonic Mucosa Colon
4 chr1:220132800-220177000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:220137200-220145800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:220138600-220143000 Weak transcription Ovary ovary
7 chr1:220139200-220145400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:220139400-220143600 Weak transcription NHEK skin
9 chr1:220139400-220146000 Weak transcription Colon Smooth Muscle Colon
10 chr1:220139400-220154000 Weak transcription Fetal Lung lung
11 chr1:220139600-220143600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:220139600-220144600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:220139800-220143600 Weak transcription Fetal Brain Female brain
14 chr1:220140000-220144400 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr1:220140000-220146000 Weak transcription Psoas Muscle Psoas
16 chr1:220140000-220167400 Weak transcription Gastric stomach
17 chr1:220140200-220143200 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:220140200-220151800 Weak transcription NHLF lung
19 chr1:220140200-220157600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:220140200-220160000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:220140400-220144200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:220140400-220146000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:220140400-220154200 Weak transcription Esophagus oesophagus
24 chr1:220140600-220143400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:220140600-220143600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:220140600-220144600 Weak transcription A549 lung
27 chr1:220140600-220146000 Weak transcription Brain Angular Gyrus brain
28 chr1:220140600-220146200 Weak transcription Spleen Spleen
29 chr1:220140600-220162400 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr1:220140600-220162400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:220140600-220163000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:220140800-220143800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:220140800-220144000 Strong transcription Lung lung
34 chr1:220140800-220144200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:220140800-220144200 Strong transcription Fetal Adrenal Gland Adrenal Gland
36 chr1:220140800-220144200 Strong transcription Fetal Muscle Trunk muscle
37 chr1:220140800-220144200 Strong transcription Fetal Stomach stomach
38 chr1:220140800-220144400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:220140800-220146800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:220140800-220146800 Weak transcription Fetal Heart heart
41 chr1:220140800-220147000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:220140800-220150000 Strong transcription Sigmoid Colon Sigmoid Colon
43 chr1:220140800-220150800 Strong transcription Left Ventricle heart
44 chr1:220140800-220161800 Strong transcription Fetal Thymus thymus
45 chr1:220140800-220162400 Strong transcription Fetal Intestine Large intestine
46 chr1:220140800-220162400 Strong transcription Monocytes-CD14+_RO01746 blood
47 chr1:220140800-220163200 Strong transcription Primary T cells from cord blood blood
48 chr1:220140800-220164000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:220140800-220173400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:220140800-220192400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015