The 2.0 version of rSNPBase

Variant report

Variant rs2030079
Chromosome Location chr1:220141533-220141534
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220129200-220145800 Weak transcription HepG2 liver
2 chr1:220132200-220144200 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:220132400-220143200 Weak transcription Colonic Mucosa Colon
4 chr1:220132800-220177000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:220133600-220142200 Weak transcription Small Intestine intestine
6 chr1:220137200-220145800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:220137400-220142000 Weak transcription Pancreas Pancrea
8 chr1:220137600-220142200 Weak transcription Primary B cells from cord blood blood
9 chr1:220138600-220143000 Weak transcription Ovary ovary
10 chr1:220138800-220141600 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:220138800-220142000 Weak transcription Fetal Intestine Small intestine
12 chr1:220139200-220141600 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:220139200-220141600 Weak transcription Rectal Smooth Muscle rectum
14 chr1:220139200-220145400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:220139400-220143600 Weak transcription NHEK skin
16 chr1:220139400-220146000 Weak transcription Colon Smooth Muscle Colon
17 chr1:220139400-220154000 Weak transcription Fetal Lung lung
18 chr1:220139600-220143600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr1:220139600-220144600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr1:220139800-220141600 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr1:220139800-220141600 Weak transcription Primary monocytes fromperipheralblood blood
22 chr1:220139800-220141600 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:220139800-220143600 Weak transcription Fetal Brain Female brain
24 chr1:220140000-220141600 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr1:220140000-220141600 Weak transcription Placenta Placenta
26 chr1:220140000-220141800 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr1:220140000-220144400 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr1:220140000-220146000 Weak transcription Psoas Muscle Psoas
29 chr1:220140000-220167400 Weak transcription Gastric stomach
30 chr1:220140200-220141800 Weak transcription NHDF-Ad bronchial
31 chr1:220140200-220142000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:220140200-220143200 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr1:220140200-220151800 Weak transcription NHLF lung
34 chr1:220140200-220157600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:220140200-220160000 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr1:220140400-220142000 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:220140400-220142000 Weak transcription GM12878-XiMat blood
38 chr1:220140400-220144200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr1:220140400-220146000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
40 chr1:220140400-220154200 Weak transcription Esophagus oesophagus
41 chr1:220140600-220142200 Weak transcription Hela-S3 cervix
42 chr1:220140600-220143400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:220140600-220143600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:220140600-220144600 Weak transcription A549 lung
45 chr1:220140600-220146000 Weak transcription Brain Angular Gyrus brain
46 chr1:220140600-220146200 Weak transcription Spleen Spleen
47 chr1:220140600-220162400 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:220140600-220162400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr1:220140600-220163000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:220140800-220141600 Strong transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015