The 2.0 version of rSNPBase

Variant report

Variant rs12065388
Chromosome Location chr1:180457100-180457101
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
2 chr1:180425800-180457600 Weak transcription Aorta Aorta
3 chr1:180428000-180470000 Weak transcription Rectal Smooth Muscle rectum
4 chr1:180431200-180470200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:180432000-180470600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:180434000-180465600 Weak transcription Fetal Brain Male brain
7 chr1:180434200-180470200 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:180434800-180458800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:180435200-180469000 Weak transcription Brain Angular Gyrus brain
10 chr1:180437600-180470400 Weak transcription Right Ventricle heart
11 chr1:180437600-180470600 Weak transcription Spleen Spleen
12 chr1:180437600-180471000 Weak transcription Lung lung
13 chr1:180440000-180469000 Weak transcription HSMMtube muscle
14 chr1:180440200-180468400 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr1:180440200-180469000 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:180441800-180462800 Weak transcription NHLF lung
17 chr1:180443400-180468200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:180444800-180470600 Weak transcription Esophagus oesophagus
19 chr1:180447000-180470400 Weak transcription Colonic Mucosa Colon
20 chr1:180447800-180469000 Weak transcription Brain Cingulate Gyrus brain
21 chr1:180448400-180470200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:180448800-180460800 Weak transcription Brain Germinal Matrix brain
23 chr1:180449200-180457800 Weak transcription Fetal Intestine Small intestine
24 chr1:180449200-180469000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:180449400-180466800 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr1:180449800-180465600 Weak transcription Fetal Brain Female brain
27 chr1:180452000-180461400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr1:180452000-180465200 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:180452000-180469000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:180452000-180470000 Weak transcription Fetal Heart heart
31 chr1:180452200-180458400 Weak transcription Stomach Mucosa stomach
32 chr1:180452200-180459000 Weak transcription Osteobl bone
33 chr1:180452200-180463400 Weak transcription Brain Hippocampus Middle brain
34 chr1:180452200-180467000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr1:180452400-180458800 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr1:180452400-180460400 Weak transcription NHDF-Ad bronchial
37 chr1:180452400-180464000 Weak transcription Colon Smooth Muscle Colon
38 chr1:180453000-180458000 Strong transcription GM12878-XiMat blood
39 chr1:180453200-180467400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:180453400-180457400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:180453600-180457400 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr1:180453600-180458000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:180453800-180457600 Strong transcription Dnd41 blood
44 chr1:180453800-180457800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:180453800-180470600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:180454200-180457400 Strong transcription Primary B cells from peripheral blood blood
47 chr1:180454200-180458000 Strong transcription Primary T helper cells PMA-I stimulated --
48 chr1:180454200-180458400 Strong transcription Fetal Lung lung
49 chr1:180454200-180459000 Strong transcription Fetal Muscle Leg muscle
50 chr1:180454200-180459400 Strong transcription Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015