The 2.0 version of rSNPBase

Variant report

Variant rs58369506
Chromosome Location chr1:180382245-180382246
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180341200-180401400 Weak transcription Osteobl bone
2 chr1:180348200-180382600 Weak transcription Pancreas Pancrea
3 chr1:180349400-180407000 Weak transcription Esophagus oesophagus
4 chr1:180352800-180399400 Weak transcription Fetal Thymus thymus
5 chr1:180354800-180386600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:180355200-180402600 Weak transcription HMEC breast
7 chr1:180355600-180390800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:180356600-180394000 Weak transcription NHDF-Ad bronchial
9 chr1:180356800-180406200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:180356800-180407000 Weak transcription Aorta Aorta
11 chr1:180360400-180394200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:180361000-180383400 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr1:180361400-180407600 Weak transcription HepG2 liver
14 chr1:180361600-180382800 Weak transcription Liver Liver
15 chr1:180363400-180385200 Weak transcription Fetal Kidney kidney
16 chr1:180364000-180394200 Weak transcription HSMMtube muscle
17 chr1:180364400-180383400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:180364400-180384200 Weak transcription Brain Anterior Caudate brain
19 chr1:180364400-180392800 Weak transcription Brain Cingulate Gyrus brain
20 chr1:180364400-180401600 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:180364600-180401000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:180364800-180383800 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr1:180364800-180390200 Weak transcription Fetal Muscle Trunk muscle
24 chr1:180365000-180391200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr1:180365000-180401000 Weak transcription Ovary ovary
26 chr1:180365200-180390200 Weak transcription Brain Angular Gyrus brain
27 chr1:180365200-180420600 Weak transcription A549 lung
28 chr1:180365400-180402600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:180365600-180384600 Weak transcription Fetal Muscle Leg muscle
30 chr1:180366200-180390200 Weak transcription Fetal Brain Male brain
31 chr1:180366600-180393600 Weak transcription NH-A brain
32 chr1:180366800-180394000 Weak transcription Fetal Lung lung
33 chr1:180369600-180385000 Weak transcription HUVEC blood vessel
34 chr1:180370600-180391400 Weak transcription Lung lung
35 chr1:180371200-180394400 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr1:180373600-180384400 Weak transcription Primary monocytes fromperipheralblood blood
37 chr1:180374400-180384400 Weak transcription H1 Cell Line embryonic stem cell
38 chr1:180374600-180394200 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr1:180374600-180404000 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr1:180374800-180394000 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:180374800-180394000 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:180376200-180407400 Weak transcription NHLF lung
43 chr1:180376400-180386800 Weak transcription Fetal Brain Female brain
44 chr1:180376800-180382600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:180376800-180395800 Weak transcription Colon Smooth Muscle Colon
46 chr1:180377000-180394200 Weak transcription Gastric stomach
47 chr1:180377800-180383800 Weak transcription Small Intestine intestine
48 chr1:180377800-180390200 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr1:180378000-180382400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:180378000-180382400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015