The 2.0 version of rSNPBase

Variant report

Variant rs6670242
Chromosome Location chr1:180434348-180434349
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180392600-180446200 Weak transcription K562 blood
2 chr1:180403400-180448000 Weak transcription HMEC breast
3 chr1:180404400-180469000 Weak transcription Pancreas Pancrea
4 chr1:180421000-180448000 Weak transcription HSMM muscle
5 chr1:180421200-180451600 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:180425800-180457600 Weak transcription Aorta Aorta
7 chr1:180427400-180448200 Weak transcription Osteobl bone
8 chr1:180428000-180470000 Weak transcription Rectal Smooth Muscle rectum
9 chr1:180428600-180438000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr1:180429400-180435200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:180429600-180444600 Weak transcription Esophagus oesophagus
12 chr1:180429600-180455000 Weak transcription Left Ventricle heart
13 chr1:180430200-180454600 Weak transcription Thymus Thymus
14 chr1:180431200-180435200 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
15 chr1:180431200-180470200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:180431400-180447800 Weak transcription Fetal Stomach stomach
17 chr1:180431400-180448200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr1:180432000-180451400 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr1:180432000-180470600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr1:180432200-180448000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:180432600-180439400 Weak transcription Hela-S3 cervix
22 chr1:180432800-180434600 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:180433000-180439600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:180433200-180434400 ZNF genes & repeats Primary hematopoietic stem cells blood
25 chr1:180433600-180454200 Weak transcription Adipose Nuclei Adipose
26 chr1:180433800-180455000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:180434000-180434400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:180434000-180448000 Weak transcription Duodenum Mucosa Duodenum
29 chr1:180434000-180465600 Weak transcription Fetal Brain Male brain
30 chr1:180434200-180434400 ZNF genes & repeats Brain Inferior Temporal Lobe brain
31 chr1:180434200-180434600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr1:180434200-180434800 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr1:180434200-180435400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:180434200-180445200 Weak transcription Dnd41 blood
35 chr1:180434200-180470200 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015