Variant report

Variant	rs12085777
Chromosome Location	chr1:172889177-172889178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10912493	0.85[AFR][1000 genomes]
rs11799419	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808521	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063352	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070646	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077150	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845082	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845125	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811833	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803204	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803577	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865614	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56385939	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583107	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489932	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60905087	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983514	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172882800-172889400	Enhancers	HUVEC	blood vessel
2	chr1:172883000-172889600	Enhancers	NHLF	lung
3	chr1:172883400-172889200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:172883400-172889400	Enhancers	NHDF-Ad	bronchial
5	chr1:172883600-172889400	Enhancers	HMEC	breast
6	chr1:172883600-172890400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172883800-172890600	Enhancers	HSMMtube	muscle
8	chr1:172884000-172889600	Enhancers	HSMM	muscle
9	chr1:172885200-172889800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:172887400-172889600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:172887600-172889400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172887600-172889600	Enhancers	NHEK	skin
13	chr1:172887600-172889800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:172887800-172889200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:172887800-172889400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:172888000-172897200	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:172888200-172890000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:172888200-172890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:172888200-172895600	Weak transcription	Osteobl	bone
20	chr1:172888400-172897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:172888800-172897400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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