Variant report

Variant	rs16845082
Chromosome Location	chr1:172876363-172876364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FASLG-1	chr1:172876040-172876392	ENSG00000224000

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11799419	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808521	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063352	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063378	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065966	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070646	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077150	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085777	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845072	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845125	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394470	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803204	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803577	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865614	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56385939	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440247	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57583107	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489932	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60905087	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172865800-172878400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172869600-172876800	Enhancers	NHLF	lung
3	chr1:172871000-172876600	Enhancers	HSMM	muscle
4	chr1:172871200-172877000	Enhancers	NHDF-Ad	bronchial
5	chr1:172871200-172877200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:172871400-172876400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:172871400-172876800	Enhancers	Osteobl	bone
8	chr1:172871400-172877000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:172871600-172877000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:172872200-172876400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:172872200-172876600	Enhancers	HSMMtube	muscle
12	chr1:172872200-172876800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172872200-172876800	Enhancers	HMEC	breast
14	chr1:172872400-172876600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:172872600-172877000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:172872800-172876800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:172874000-172876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172874600-172876800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:172874800-172877000	Enhancers	Primary B cells from peripheral blood	blood
20	chr1:172874800-172877000	Enhancers	NHEK	skin
21	chr1:172875000-172877000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:172875000-172877000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr1:172875200-172876400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:172875200-172876800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:172875200-172876800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr1:172875200-172876800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr1:172875200-172876800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr1:172875200-172876800	Enhancers	Hela-S3	cervix
29	chr1:172875200-172877000	Enhancers	Primary B cells from cord blood	blood
30	chr1:172875200-172877000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:172875200-172878600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:172875400-172877000	Enhancers	Primary hematopoietic stem cells	blood
33	chr1:172875600-172876800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:172875800-172876400	Enhancers	Fetal Intestine Large	intestine
35	chr1:172875800-172876400	Enhancers	Fetal Intestine Small	intestine
36	chr1:172875800-172876800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr1:172875800-172876800	Enhancers	Fetal Thymus	thymus
38	chr1:172876000-172876400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:172876000-172876400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr1:172876000-172876400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr1:172876000-172876400	Enhancers	GM12878-XiMat	blood
42	chr1:172876000-172876400	Flanking Active TSS	NH-A	brain
43	chr1:172876000-172876600	Enhancers	Small Intestine	intestine
44	chr1:172876000-172876800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:172876000-172876800	Enhancers	Stomach Mucosa	stomach
46	chr1:172876000-172876800	Enhancers	K562	blood
47	chr1:172876000-172877000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:172876000-172877000	Genic enhancers	A549	lung
49	chr1:172876000-172877200	Flanking Active TSS	Dnd41	blood
50	chr1:172876200-172876400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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