The 2.0 version of rSNPBase

Variant report

Variant rs60905087
Chromosome Location chr1:172908289-172908290
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172902600-172908800 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr1:172902800-172908800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:172903600-172914200 Weak transcription Aorta Aorta
4 chr1:172903800-172908400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr1:172903800-172908400 Weak transcription Fetal Stomach stomach
6 chr1:172903800-172908600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:172904000-172908600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr1:172904000-172909200 Weak transcription Colon Smooth Muscle Colon
9 chr1:172904000-172909400 Weak transcription HSMMtube muscle
10 chr1:172904200-172908400 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr1:172904200-172908800 Weak transcription Placenta Amnion Placenta Amnion
12 chr1:172904200-172909800 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:172904600-172909400 Weak transcription HMEC breast
14 chr1:172905400-172910600 Weak transcription Left Ventricle heart
15 chr1:172905600-172909600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:172905600-172916000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:172906000-172908400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:172906000-172910600 Weak transcription Spleen Spleen
19 chr1:172906000-172910600 Weak transcription A549 lung
20 chr1:172907200-172911200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:172907400-172908400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:172907400-172908600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:172907400-172911200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:172907400-172911200 Enhancers NHDF-Ad bronchial
25 chr1:172907600-172911400 Enhancers NHLF lung
26 chr1:172908000-172908600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:172908200-172908400 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015