The 2.0 version of rSNPBase

Variant report

Variant rs56385939
Chromosome Location chr1:172905314-172905315
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172900600-172906000 Enhancers HUVEC blood vessel
2 chr1:172902600-172908800 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr1:172902800-172908800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:172903600-172914200 Weak transcription Aorta Aorta
5 chr1:172903800-172908400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:172903800-172908400 Weak transcription Fetal Stomach stomach
7 chr1:172903800-172908600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:172904000-172905400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:172904000-172908600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr1:172904000-172909200 Weak transcription Colon Smooth Muscle Colon
11 chr1:172904000-172909400 Weak transcription HSMMtube muscle
12 chr1:172904200-172905600 Weak transcription NHLF lung
13 chr1:172904200-172906000 Enhancers A549 lung
14 chr1:172904200-172908400 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr1:172904200-172908800 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:172904200-172909800 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:172904600-172907400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:172904600-172908000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr1:172904600-172909400 Weak transcription HMEC breast
20 chr1:172904800-172907400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:172904800-172907400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:172904800-172907400 Weak transcription NHDF-Ad bronchial
23 chr1:172905000-172905400 Enhancers Left Ventricle heart
24 chr1:172905000-172905600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:172905000-172908200 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:172905200-172906000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:172905200-172906000 Enhancers Spleen Spleen

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Last update: Aug 31, 2015