Variant report
| Variant | rs12095659 |
|---|---|
| Chromosome Location | chr1:220885831-220885832 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:220444386..220446640-chr1:220883296..220885894,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118873 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11118581 | 1.00[AMR][1000 genomes] |
| rs11118583 | 1.00[AMR][1000 genomes] |
| rs11118590 | 1.00[AMR][1000 genomes] |
| rs12082031 | 0.85[AMR][1000 genomes] |
| rs12087717 | 1.00[AMR][1000 genomes] |
| rs1337570 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs1361092 | 0.85[AMR][1000 genomes] |
| rs1361093 | 1.00[AMR][1000 genomes] |
| rs1538135 | 1.00[AMR][1000 genomes] |
| rs17008205 | 1.00[AMR][1000 genomes] |
| rs1856178 | 0.85[AMR][1000 genomes] |
| rs1890107 | 0.85[AMR][1000 genomes] |
| rs2095670 | 0.85[AMR][1000 genomes] |
| rs2210977 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs2589579 | 1.00[MEX][hapmap] |
| rs2589582 | 1.00[AMR][1000 genomes] |
| rs2589587 | 1.00[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs2589591 | 1.00[AMR][1000 genomes] |
| rs2589593 | 1.00[AMR][1000 genomes] |
| rs2786599 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs2786603 | 1.00[AMR][1000 genomes] |
| rs2786608 | 0.85[AMR][1000 genomes] |
| rs2786611 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs2786615 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs2786618 | 1.00[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs3010236 | 1.00[AMR][1000 genomes] |
| rs4846656 | 1.00[AMR][1000 genomes] |
| rs6702294 | 1.00[AMR][1000 genomes] |
| rs7520040 | 1.00[AMR][1000 genomes] |
| rs7521698 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754270 | chr1:220850116-220929155 | Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:220878400-220886000 | Enhancers | HepG2 | liver |
| 2 | chr1:220883800-220886800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
