Variant report

Variant	rs1538135
Chromosome Location	chr1:220764190-220764191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11118581	0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118583	0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118590	1.00[AMR][1000 genomes]
rs12082031	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs12087717	1.00[AMR][1000 genomes]
rs12095659	1.00[AMR][1000 genomes]
rs1337570	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361092	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361093	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008205	1.00[AMR][1000 genomes]
rs1856178	0.85[AMR][1000 genomes]
rs1890107	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1933004	0.88[AFR][1000 genomes]
rs2095670	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2210977	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589579	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2589582	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589587	0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589591	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589593	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589594	0.91[AFR][1000 genomes]
rs2786599	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786603	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786608	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786611	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786615	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786618	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2994526	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs3010236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4846656	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702294	1.00[AMR][1000 genomes]
rs7520040	1.00[AMR][1000 genomes]
rs7521698	1.00[AMR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
8	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
11	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
12	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:220752600-220768800	Weak transcription	Esophagus	oesophagus
14	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
15	chr1:220753200-220766400	Weak transcription	HMEC	breast
16	chr1:220753400-220778400	Weak transcription	NHEK	skin
17	chr1:220753800-220767000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:220756000-220767000	Weak transcription	Brain Germinal Matrix	brain
19	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:220756600-220767200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:220758000-220765800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:220761200-220764400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:220761600-220767400	Weak transcription	Right Ventricle	heart
26	chr1:220762000-220771600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:220762600-220766400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:220762600-220767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:220762600-220767200	Weak transcription	Pancreas	Pancrea
30	chr1:220762600-220768800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:220762600-220769000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:220763000-220767400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:220763000-220767400	Weak transcription	Adipose Nuclei	Adipose
35	chr1:220763000-220767400	Weak transcription	HUVEC	blood vessel
36	chr1:220763200-220764200	Strong transcription	Fetal Brain Female	brain
37	chr1:220763200-220764400	Strong transcription	Fetal Heart	heart
38	chr1:220763400-220765200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr1:220763400-220767800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:220763400-220768000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr1:220763800-220764200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:220763800-220766800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:220764000-220766600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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