Variant report

Variant	rs2786599
Chromosome Location	chr1:220789236-220789237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220789003..220791666-chr1:220792355..220794125,2	MCF-7	breast:
2	chr1:220788017..220790336-chr1:220794167..220796407,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10779410	0.89[ASW][hapmap]
rs11118581	0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118583	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118590	1.00[AMR][1000 genomes]
rs12082031	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12087717	1.00[AMR][1000 genomes]
rs12095659	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1337570	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361092	1.00[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361093	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538135	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008205	1.00[AMR][1000 genomes]
rs1856178	0.85[AMR][1000 genomes]
rs1890107	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1933004	0.85[AFR][1000 genomes]
rs2095670	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2210977	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589579	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2589582	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589587	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589591	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589593	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589594	0.88[AFR][1000 genomes]
rs2786603	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786608	1.00[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786611	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786615	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786618	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2994526	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs3010236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4846656	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702294	1.00[AMR][1000 genomes]
rs7520040	1.00[AMR][1000 genomes]
rs7521698	1.00[AMR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
2	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
3	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
4	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:220768000-220790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:220768200-220791600	Weak transcription	Brain Germinal Matrix	brain
14	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
15	chr1:220774000-220796000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:220776000-220798800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:220776400-220789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:220776400-220790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:220777200-220793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:220778000-220793600	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:220778800-220791000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:220778800-220837200	Weak transcription	NHEK	skin
23	chr1:220781000-220791600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:220782800-220825800	Weak transcription	Fetal Brain Male	brain
25	chr1:220783200-220815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:220783400-220791800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
28	chr1:220784800-220799200	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:220784800-220815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:220785000-220789600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:220785000-220791800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:220785000-220799200	Weak transcription	Fetal Brain Female	brain
33	chr1:220785000-220815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:220785800-220808600	Weak transcription	Brain Anterior Caudate	brain
35	chr1:220786800-220799800	Weak transcription	Fetal Heart	heart
36	chr1:220787800-220789600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:220788800-220799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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