Variant report

Variant	rs2786608
Chromosome Location	chr1:220730453-220730454
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220704344..220706297-chr1:220728162..220730559,2	MCF-7	breast:
2	chr1:220722411..220725899-chr1:220728860..220731910,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10779410	0.89[ASW][hapmap];1.00[MEX][hapmap]
rs11118581	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs11118583	0.95[YRI][hapmap];0.85[AMR][1000 genomes]
rs11118590	0.85[AMR][1000 genomes]
rs12082031	1.00[YRI][hapmap]
rs12087717	0.85[AMR][1000 genomes]
rs12095659	0.85[AMR][1000 genomes]
rs1337570	1.00[ASW][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361092	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1361093	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1538135	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17008205	0.85[AMR][1000 genomes]
rs1856178	0.81[AFR][1000 genomes]
rs1890107	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1933004	0.85[AFR][1000 genomes]
rs2095670	1.00[ASW][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2210977	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589579	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2589582	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589587	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589591	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589593	0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589594	0.88[AFR][1000 genomes]
rs2786599	1.00[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786603	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786611	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786615	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786618	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2994526	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs3010236	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4846656	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6702294	0.85[AMR][1000 genomes]
rs7520040	0.85[AMR][1000 genomes]
rs7521698	0.85[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
3	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
8	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
9	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
10	chr1:220724800-220738800	Weak transcription	Right Atrium	heart
11	chr1:220726000-220732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:220727400-220736400	Weak transcription	Brain Germinal Matrix	brain
13	chr1:220727400-220738800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:220727800-220738800	Weak transcription	Fetal Heart	heart
15	chr1:220728000-220745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:220728600-220730600	Weak transcription	Left Ventricle	heart
17	chr1:220728600-220739000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:220728800-220730600	Enhancers	NHEK	skin
19	chr1:220729000-220735400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:220729600-220730600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:220729800-220739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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