Variant report

Variant	rs2589582
Chromosome Location	chr1:220740779-220740780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11118581	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs11118583	0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs11118590	1.00[AMR][1000 genomes]
rs12082031	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs12087717	1.00[AMR][1000 genomes]
rs12095659	1.00[AMR][1000 genomes]
rs1337570	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361092	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361093	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1538135	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008205	1.00[AMR][1000 genomes]
rs1856178	0.85[AMR][1000 genomes]
rs1890107	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1933004	0.82[AFR][1000 genomes]
rs2095670	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2210977	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589579	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2589587	0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589591	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589593	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2589594	0.85[AFR][1000 genomes]
rs2786599	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786603	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786608	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786611	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786615	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786618	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2994526	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3010236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4846656	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702294	1.00[AMR][1000 genomes]
rs7520040	1.00[AMR][1000 genomes]
rs7521698	1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
2	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
3	chr1:220728000-220745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:220737800-220746400	Weak transcription	Fetal Brain Female	brain
6	chr1:220738800-220743000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:220739200-220741200	Weak transcription	Left Ventricle	heart
8	chr1:220739200-220741600	Weak transcription	Fetal Heart	heart
9	chr1:220739200-220747200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:220739200-220748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:220739400-220746200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:220739800-220741000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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