Variant report

Variant	rs1890107
Chromosome Location	chr1:220718110-220718111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10779410	0.85[AMR][1000 genomes]
rs10863558	0.85[AMR][1000 genomes]
rs11118581	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs11118583	0.96[YRI][hapmap];0.85[AMR][1000 genomes]
rs11118590	0.85[AMR][1000 genomes]
rs12082031	1.00[YRI][hapmap]
rs12087717	0.85[AMR][1000 genomes]
rs12095659	0.85[AMR][1000 genomes]
rs1337570	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1361092	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361093	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1538135	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17008205	0.85[AMR][1000 genomes]
rs1933004	0.83[AFR][1000 genomes]
rs2095670	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2210977	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589579	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2589582	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589587	0.95[YRI][hapmap];0.98[AFR][1000 genomes]
rs2589591	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589593	0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2589594	0.86[AFR][1000 genomes]
rs2786599	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786603	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786608	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2786611	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786615	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2786618	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2994526	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3010236	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4120854	0.85[AMR][1000 genomes]
rs4846656	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6541147	0.85[AMR][1000 genomes]
rs6702294	0.85[AMR][1000 genomes]
rs7520040	0.85[AMR][1000 genomes]
rs7521698	0.85[AMR][1000 genomes]
rs7541080	0.85[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220703400-220724400	Weak transcription	Aorta	Aorta
2	chr1:220706000-220723800	Weak transcription	Fetal Brain Male	brain
3	chr1:220715600-220718600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:220716000-220718200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:220716000-220722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:220716600-220718600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:220717600-220718800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:220717800-220718200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:220717800-220718800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:220718000-220718400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:220718000-220718600	Enhancers	Fetal Heart	heart
12	chr1:220718000-220722200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:220718000-220722200	Weak transcription	Brain Angular Gyrus	brain
14	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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