Variant report

Variant	rs12098883
Chromosome Location	chr11:86569706-86569707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28610039	1.00[AMR][1000 genomes]
rs55952841	1.00[AMR][1000 genomes]
rs56166229	1.00[AMR][1000 genomes]
rs56854149	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	1.00[AMR][1000 genomes]
rs58710282	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61366494	1.00[AMR][1000 genomes]
rs61595397	1.00[AMR][1000 genomes]
rs73524236	1.00[AMR][1000 genomes]
rs73524238	1.00[AMR][1000 genomes]
rs73524243	1.00[AMR][1000 genomes]
rs73524249	1.00[AMR][1000 genomes]
rs73524251	1.00[AMR][1000 genomes]
rs73524254	1.00[AMR][1000 genomes]
rs73524262	1.00[AMR][1000 genomes]
rs73524267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1836220	chr11:86542005-86573310	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86549600-86581400	Weak transcription	Ovary	ovary
4	chr11:86549800-86576400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:86550000-86575200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:86562600-86585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:86563200-86575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:86563400-86575400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86564000-86575200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:86566200-86575200	Weak transcription	Aorta	Aorta
12	chr11:86566800-86585800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:86568200-86575000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:86568800-86580600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:86569200-86574400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:86569400-86571200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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