Variant report

Variant	rs73524249
Chromosome Location	chr11:86473052-86473053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86472937..86474717-chr11:86478043..86479834,2	MCF-7	breast:
2	chr11:86472552..86476130-chr11:86481757..86485497,4	MCF-7	breast:
3	chr11:86471960..86474336-chr11:86510433..86512699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55952841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166229	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854149	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710282	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61366494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61595397	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86454000-86474000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
3	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
4	chr11:86471400-86473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:86471400-86473800	Enhancers	Osteobl	bone
6	chr11:86471600-86473600	Enhancers	A549	lung
7	chr11:86471600-86473800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:86471600-86473800	Enhancers	NH-A	brain
9	chr11:86471600-86474400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:86472600-86473200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:86472600-86473800	Enhancers	NHDF-Ad	bronchial
12	chr11:86472600-86474000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86472800-86473200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:86472800-86473200	Enhancers	HMEC	breast
15	chr11:86472800-86473400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:86472800-86473400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:86472800-86473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:86472800-86473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:86472800-86473800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:86472800-86473800	Enhancers	Hela-S3	cervix
21	chr11:86472800-86473800	Enhancers	HSMMtube	muscle
22	chr11:86472800-86473800	Enhancers	NHLF	lung
23	chr11:86472800-86474200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:86472800-86474400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:86473000-86473200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:86473000-86473200	Enhancers	Left Ventricle	heart
27	chr11:86473000-86473400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86473000-86473600	Enhancers	NHEK	skin
29	chr11:86473000-86473800	Enhancers	HSMM	muscle

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