Variant report

Variant	rs61366494
Chromosome Location	chr11:86446374-86446375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86438833..86441351-chr11:86445320..86447426,4	MCF-7	breast:
2	chr11:86445788..86450763-chr11:86452280..86455324,5	K562	blood:
3	chr11:86445700..86450143-chr11:86450733..86453676,4	MCF-7	breast:
4	chr11:86382791..86384819-chr11:86445397..86448151,2	MCF-7	breast:
5	chr11:86445661..86448422-chr11:86500757..86504196,4	MCF-7	breast:
6	chr11:86446334..86448722-chr11:86490852..86493629,3	MCF-7	breast:
7	chr11:86445705..86457398-chr11:86504607..86518485,46	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55732657	0.85[AFR][1000 genomes]
rs55952841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854149	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710282	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61595397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524243	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524251	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86434800-86446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:86437800-86446400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:86438400-86446400	Weak transcription	NHEK	skin
6	chr11:86439800-86446400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86440000-86446600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86444400-86447400	Enhancers	Hela-S3	cervix
9	chr11:86444600-86446400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:86446000-86446400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:86446000-86446600	Enhancers	NHDF-Ad	bronchial
12	chr11:86446000-86446800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:86446000-86447200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:86446000-86448000	Flanking Active TSS	A549	lung
15	chr11:86446000-86451600	Enhancers	NHLF	lung
16	chr11:86446000-86451800	Enhancers	HUVEC	blood vessel
17	chr11:86446000-86452000	Enhancers	HSMM	muscle
18	chr11:86446000-86458000	Enhancers	HMEC	breast
19	chr11:86446200-86446800	Genic enhancers	Fetal Kidney	kidney
20	chr11:86446200-86447200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:86446200-86448000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr11:86446200-86448600	Enhancers	Fetal Brain Male	brain
23	chr11:86446200-86452000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:86446200-86452000	Enhancers	NH-A	brain
25	chr11:86446200-86452000	Enhancers	Osteobl	bone
26	chr11:86446200-86453200	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links