Variant report

Variant	rs56166229
Chromosome Location	chr11:86474541-86474542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86472937..86474717-chr11:86478043..86479834,2	MCF-7	breast:
2	chr11:86472552..86476130-chr11:86481757..86485497,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55732657	0.85[AFR][1000 genomes]
rs55952841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854149	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710282	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61366494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61595397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524236	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524243	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524249	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524251	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86456600-86478000	Weak transcription	Aorta	Aorta
2	chr11:86461400-86479600	Weak transcription	Psoas Muscle	Psoas
3	chr11:86473200-86475200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:86473600-86480200	Weak transcription	A549	lung
5	chr11:86473800-86475800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:86473800-86476200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:86473800-86479600	Weak transcription	Left Ventricle	heart
8	chr11:86473800-86480000	Weak transcription	HSMMtube	muscle
9	chr11:86473800-86480200	Weak transcription	Hela-S3	cervix
10	chr11:86473800-86480200	Weak transcription	Osteobl	bone
11	chr11:86474200-86475600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:86474400-86479600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:86474400-86480200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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