Variant report

Variant	rs56854149
Chromosome Location	chr11:86411454-86411455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86410588..86412313-chr11:86452715..86455271,2	K562	blood:
2	chr11:86411235..86420303-chr11:86507153..86518645,29	MCF-7	breast:
3	chr11:86410023..86412517-chr11:86415107..86418270,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55952841	1.00[AMR][1000 genomes]
rs56166229	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	1.00[AMR][1000 genomes]
rs58710282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61366494	1.00[AMR][1000 genomes]
rs61595397	1.00[AMR][1000 genomes]
rs73524236	1.00[AMR][1000 genomes]
rs73524238	1.00[AMR][1000 genomes]
rs73524243	1.00[AMR][1000 genomes]
rs73524249	1.00[AMR][1000 genomes]
rs73524251	1.00[AMR][1000 genomes]
rs73524254	1.00[AMR][1000 genomes]
rs73524262	1.00[AMR][1000 genomes]
rs73524267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86399600-86415800	Weak transcription	Fetal Heart	heart
3	chr11:86400600-86414800	Weak transcription	Ovary	ovary
4	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
5	chr11:86407600-86412800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:86407600-86417000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:86408000-86413200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:86408000-86431400	Weak transcription	Aorta	Aorta
9	chr11:86408200-86413200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:86408400-86412400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:86408400-86413200	Weak transcription	NHLF	lung
12	chr11:86408600-86412600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:86409600-86413000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:86410200-86413200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:86410600-86412600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:86410600-86412600	Weak transcription	NHDF-Ad	bronchial
17	chr11:86410600-86413000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:86410600-86419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:86410800-86411600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:86410800-86411600	Enhancers	Colon Smooth Muscle	Colon
21	chr11:86410800-86412600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:86410800-86416400	Weak transcription	A549	lung
23	chr11:86410800-86419400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:86410800-86420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:86411000-86428000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:86411000-86429000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:86411200-86411600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:86411200-86413400	Weak transcription	Psoas Muscle	Psoas
29	chr11:86411400-86411600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr11:86411400-86411800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:86411400-86411800	Enhancers	Pancreatic Islets	Pancreatic Islet

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