Variant report

Variant	rs58710282
Chromosome Location	chr11:86401905-86401906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86401125..86402714-chr11:86404169..86406259,2	K562	blood:
2	chr11:86400130..86402377-chr11:86406306..86409290,2	K562	blood:
3	chr11:86401412..86402973-chr11:86510296..86512382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55952841	1.00[AMR][1000 genomes]
rs56166229	1.00[AMR][1000 genomes]
rs56854149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	1.00[AMR][1000 genomes]
rs61366494	1.00[AMR][1000 genomes]
rs61595397	1.00[AMR][1000 genomes]
rs73524236	1.00[AMR][1000 genomes]
rs73524238	1.00[AMR][1000 genomes]
rs73524243	1.00[AMR][1000 genomes]
rs73524249	1.00[AMR][1000 genomes]
rs73524251	1.00[AMR][1000 genomes]
rs73524254	1.00[AMR][1000 genomes]
rs73524262	1.00[AMR][1000 genomes]
rs73524267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86385200-86411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86388000-86409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:86390000-86403600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:86393000-86406800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:86398800-86405400	Weak transcription	Hela-S3	cervix
7	chr11:86399600-86415800	Weak transcription	Fetal Heart	heart
8	chr11:86399800-86406400	Weak transcription	HUVEC	blood vessel
9	chr11:86399800-86406600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:86400000-86402800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:86400000-86403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:86400000-86403000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:86400000-86403200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:86400000-86403400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:86400000-86403400	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:86400200-86402800	Weak transcription	A549	lung
17	chr11:86400200-86403000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:86400200-86403000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:86400200-86403000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:86400200-86403200	Weak transcription	Osteobl	bone
21	chr11:86400400-86402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:86400600-86402200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:86400600-86402800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:86400600-86402800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:86400600-86402800	Weak transcription	HSMM	muscle
26	chr11:86400600-86402800	Weak transcription	NHDF-Ad	bronchial
27	chr11:86400600-86403000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:86400600-86403000	Weak transcription	NH-A	brain
29	chr11:86400600-86403000	Weak transcription	NHLF	lung
30	chr11:86400600-86405000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:86400600-86405000	Weak transcription	HSMMtube	muscle
32	chr11:86400600-86406600	Weak transcription	Aorta	Aorta
33	chr11:86400600-86406600	Weak transcription	Left Ventricle	heart
34	chr11:86400600-86406600	Weak transcription	Right Ventricle	heart
35	chr11:86400600-86410800	Weak transcription	Psoas Muscle	Psoas
36	chr11:86400600-86414800	Weak transcription	Ovary	ovary
37	chr11:86400800-86402800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:86400800-86405000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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