Variant report

Variant	rs73524267
Chromosome Location	chr11:86480567-86480568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86479312..86481621-chr11:86482374..86485303,2	MCF-7	breast:
2	chr11:86474930..86477199-chr11:86478962..86481017,2	K562	blood:
3	chr11:86480465..86482047-chr11:86485833..86487935,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11234799	0.82[AFR][1000 genomes]
rs12098883	1.00[AMR][1000 genomes]
rs28610039	1.00[AMR][1000 genomes]
rs55952841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166229	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56854149	1.00[AMR][1000 genomes]
rs57256139	1.00[AMR][1000 genomes]
rs57359459	1.00[AMR][1000 genomes]
rs57474351	1.00[AMR][1000 genomes]
rs58150495	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710282	1.00[AMR][1000 genomes]
rs58869389	1.00[AMR][1000 genomes]
rs59841049	1.00[AMR][1000 genomes]
rs60587481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61366494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61595397	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66827623	0.82[AFR][1000 genomes]
rs67313042	0.82[AFR][1000 genomes]
rs73524236	1.00[AMR][1000 genomes]
rs73524238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73524262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv468775	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555705	chr11:86453415-86480716	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86477200-86482800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:86477800-86484200	Weak transcription	Fetal Stomach	stomach
3	chr11:86479400-86482000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:86479600-86480800	Enhancers	Left Ventricle	heart
5	chr11:86479600-86481000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:86479600-86481000	Enhancers	Psoas Muscle	Psoas
7	chr11:86479600-86481000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:86479600-86481000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:86479800-86481000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:86480000-86480600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:86480000-86480800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:86480000-86481000	Enhancers	HSMMtube	muscle
13	chr11:86480200-86480600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:86480200-86480600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:86480200-86480600	Enhancers	NHLF	lung
16	chr11:86480200-86480800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:86480200-86480800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr11:86480200-86480800	Enhancers	Fetal Muscle Leg	muscle
19	chr11:86480200-86480800	Enhancers	Right Ventricle	heart
20	chr11:86480200-86480800	Enhancers	Osteobl	bone
21	chr11:86480200-86481000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:86480200-86481000	Enhancers	Fetal Heart	heart
23	chr11:86480200-86481000	Enhancers	A549	lung
24	chr11:86480200-86481000	Enhancers	Hela-S3	cervix
25	chr11:86480200-86481000	Enhancers	NHDF-Ad	bronchial
26	chr11:86480400-86480600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:86480400-86480800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86480400-86481000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:86480400-86481000	Enhancers	Right Atrium	heart

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