The 2.0 version of rSNPBase

Variant report

Variant rs12260883
Chromosome Location chr10:89539031-89539032
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89463000-89541400 Weak transcription Rectal Smooth Muscle rectum
2 chr10:89473000-89577200 Weak transcription Gastric stomach
3 chr10:89476200-89542400 Weak transcription Pancreas Pancrea
4 chr10:89495000-89541400 Weak transcription Right Ventricle heart
5 chr10:89495000-89576400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr10:89495200-89542600 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr10:89495200-89544600 Weak transcription Brain Substantia Nigra brain
8 chr10:89495200-89559200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr10:89495200-89577400 Weak transcription Spleen Spleen
10 chr10:89498200-89541400 Weak transcription Aorta Aorta
11 chr10:89504200-89551800 Weak transcription Psoas Muscle Psoas
12 chr10:89507000-89557600 Weak transcription Lung lung
13 chr10:89510200-89553800 Weak transcription Esophagus oesophagus
14 chr10:89511000-89576800 Weak transcription Colonic Mucosa Colon
15 chr10:89512800-89560400 Weak transcription Fetal Brain Male brain
16 chr10:89513400-89577000 Weak transcription Placenta Amnion Placenta Amnion
17 chr10:89514600-89539800 Weak transcription Fetal Kidney kidney
18 chr10:89516000-89541200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr10:89516400-89541400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr10:89516400-89557800 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr10:89518200-89556600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr10:89518400-89559000 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr10:89520200-89542800 Weak transcription Stomach Smooth Muscle stomach
24 chr10:89520400-89556400 Weak transcription Brain Germinal Matrix brain
25 chr10:89520600-89575600 Weak transcription Stomach Mucosa stomach
26 chr10:89521800-89540400 Weak transcription Thymus Thymus
27 chr10:89523200-89553000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr10:89523400-89562800 Weak transcription K562 blood
29 chr10:89523800-89562000 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr10:89524600-89560400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
31 chr10:89526000-89549000 Weak transcription Brain Angular Gyrus brain
32 chr10:89526200-89549400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr10:89526600-89541400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr10:89527400-89539600 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr10:89527400-89539600 Weak transcription Fetal Brain Female brain
36 chr10:89527400-89541000 Weak transcription Brain Hippocampus Middle brain
37 chr10:89527400-89541400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr10:89527400-89542600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr10:89527400-89553600 Weak transcription Colon Smooth Muscle Colon
40 chr10:89527400-89575000 Weak transcription Brain Inferior Temporal Lobe brain
41 chr10:89527600-89554000 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr10:89527600-89554200 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr10:89527800-89539600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr10:89527800-89547800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr10:89528600-89541400 Weak transcription HepG2 liver
46 chr10:89528800-89539400 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr10:89529600-89542600 Weak transcription H9 Cell Line embryonic stem cell
48 chr10:89529600-89542800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr10:89530200-89539400 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr10:89530800-89541200 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015