Variant report

Variant	rs59554709
Chromosome Location	chr10:89479927-89479928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89479070..89480697-chr10:89482031..89483577,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11202541	1.00[AMR][1000 genomes]
rs11202543	1.00[AMR][1000 genomes]
rs11202545	1.00[AMR][1000 genomes]
rs11202547	1.00[AMR][1000 genomes]
rs11202558	1.00[AMR][1000 genomes]
rs11202567	1.00[AMR][1000 genomes]
rs12249650	1.00[AMR][1000 genomes]
rs12250507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256014	1.00[AMR][1000 genomes]
rs12260883	1.00[AMR][1000 genomes]
rs12267237	1.00[AMR][1000 genomes]
rs12267955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268865	1.00[AMR][1000 genomes]
rs17127065	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17128988	1.00[AMR][1000 genomes]
rs56198886	1.00[AMR][1000 genomes]
rs57449780	1.00[AMR][1000 genomes]
rs58593384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115167	1.00[AMR][1000 genomes]
rs60196667	1.00[AMR][1000 genomes]
rs74146209	1.00[AMR][1000 genomes]
rs74146213	1.00[AMR][1000 genomes]
rs74146214	1.00[AMR][1000 genomes]
rs74146226	1.00[AMR][1000 genomes]
rs74146227	1.00[AMR][1000 genomes]
rs74146337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146361	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149606	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149607	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149608	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149609	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149610	1.00[AMR][1000 genomes]
rs74149611	1.00[AMR][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89462200-89494800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89462400-89482600	Weak transcription	Small Intestine	intestine
4	chr10:89462400-89482800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89463000-89489400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:89463000-89494600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:89466200-89494600	Weak transcription	A549	lung
9	chr10:89466800-89494600	Weak transcription	Hela-S3	cervix
10	chr10:89467800-89480200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:89468200-89482800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:89468600-89494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:89468800-89483200	Strong transcription	Osteobl	bone
14	chr10:89469200-89481800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:89470200-89480000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:89470200-89487000	Weak transcription	Aorta	Aorta
17	chr10:89470600-89493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:89473000-89482400	Weak transcription	Fetal Kidney	kidney
20	chr10:89473000-89577200	Weak transcription	Gastric	stomach
21	chr10:89473600-89494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:89473800-89493600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:89475200-89485600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:89475400-89487000	Weak transcription	Placenta	Placenta
25	chr10:89476000-89482800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:89476000-89483000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:89476000-89487000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:89476000-89494600	Weak transcription	NHDF-Ad	bronchial
29	chr10:89476200-89480200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:89476200-89481200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:89476200-89482800	Strong transcription	Liver	Liver
32	chr10:89476200-89489800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:89476200-89489800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:89476200-89494000	Weak transcription	Fetal Stomach	stomach
35	chr10:89476200-89494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
37	chr10:89476400-89494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:89476400-89494800	Weak transcription	Spleen	Spleen
39	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
40	chr10:89476600-89481400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr10:89477000-89481400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:89477000-89489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:89477200-89480000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:89477200-89480600	Weak transcription	Fetal Lung	lung
45	chr10:89477200-89480600	Weak transcription	HUVEC	blood vessel
46	chr10:89477200-89481200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:89477200-89481600	Weak transcription	NHLF	lung
48	chr10:89477200-89481800	Weak transcription	NH-A	brain
49	chr10:89477200-89494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:89477400-89500000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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