Variant report

Variant	rs74149607
Chromosome Location	chr10:89503498-89503499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11202541	1.00[AMR][1000 genomes]
rs11202543	1.00[AMR][1000 genomes]
rs11202545	1.00[AMR][1000 genomes]
rs11202547	1.00[AMR][1000 genomes]
rs11202558	1.00[AMR][1000 genomes]
rs11202567	1.00[AMR][1000 genomes]
rs12249650	1.00[AMR][1000 genomes]
rs12250507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256014	1.00[AMR][1000 genomes]
rs12260883	1.00[AMR][1000 genomes]
rs12267237	1.00[AMR][1000 genomes]
rs12267955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268865	1.00[AMR][1000 genomes]
rs17127065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17128988	1.00[AMR][1000 genomes]
rs56198886	1.00[AMR][1000 genomes]
rs57449780	1.00[AMR][1000 genomes]
rs58593384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59554709	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115167	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60196667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146209	1.00[AMR][1000 genomes]
rs74146213	1.00[AMR][1000 genomes]
rs74146214	1.00[AMR][1000 genomes]
rs74146226	1.00[AMR][1000 genomes]
rs74146227	1.00[AMR][1000 genomes]
rs74146337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146338	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146358	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149610	1.00[AMR][1000 genomes]
rs74149611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89473000-89577200	Weak transcription	Gastric	stomach
4	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
5	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
6	chr10:89490800-89511400	Weak transcription	Primary B cells from cord blood	blood
7	chr10:89495000-89512200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:89495000-89514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
10	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:89495200-89504200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:89495200-89504600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:89495200-89505000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:89495200-89509000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:89495200-89509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:89495200-89509600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:89495200-89511800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:89495200-89514000	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:89495200-89515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
23	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
25	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:89495600-89513000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:89498200-89519400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
29	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
30	chr10:89499000-89503600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:89499800-89511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:89500000-89504000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:89500600-89505200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr10:89500600-89511800	Weak transcription	HMEC	breast
35	chr10:89500600-89513000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:89500800-89504200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:89500800-89505000	Weak transcription	A549	lung
38	chr10:89501000-89504200	Weak transcription	NHDF-Ad	bronchial
39	chr10:89501000-89506200	Strong transcription	Fetal Intestine Small	intestine
40	chr10:89501000-89507000	Strong transcription	Osteobl	bone
41	chr10:89501000-89509600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:89501000-89511600	Weak transcription	Hela-S3	cervix
43	chr10:89501400-89508800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:89501600-89507000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:89502000-89508600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:89502200-89505600	Strong transcription	Fetal Lung	lung
47	chr10:89502200-89507000	Strong transcription	NHLF	lung
48	chr10:89502400-89503600	Enhancers	Placenta	Placenta
49	chr10:89502400-89503600	Enhancers	HepG2	liver
50	chr10:89502400-89506800	Strong transcription	Ovary	ovary

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