Variant report

Variant	rs58593384
Chromosome Location	chr10:89491800-89491801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89417900..89422022-chr10:89491019..89499459,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198682	Chromatin interaction
ENSG00000196566	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11202541	1.00[AMR][1000 genomes]
rs11202543	1.00[AMR][1000 genomes]
rs11202545	1.00[AMR][1000 genomes]
rs11202547	1.00[AMR][1000 genomes]
rs11202558	1.00[AMR][1000 genomes]
rs11202567	1.00[AMR][1000 genomes]
rs12249650	1.00[AMR][1000 genomes]
rs12250507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256014	1.00[AMR][1000 genomes]
rs12260883	1.00[AMR][1000 genomes]
rs12267237	1.00[AMR][1000 genomes]
rs12267955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268865	1.00[AMR][1000 genomes]
rs17127065	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17128988	1.00[AMR][1000 genomes]
rs56198886	1.00[AMR][1000 genomes]
rs57449780	1.00[AMR][1000 genomes]
rs59554709	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115167	1.00[AMR][1000 genomes]
rs60196667	1.00[AMR][1000 genomes]
rs74146209	1.00[AMR][1000 genomes]
rs74146213	1.00[AMR][1000 genomes]
rs74146214	1.00[AMR][1000 genomes]
rs74146226	1.00[AMR][1000 genomes]
rs74146227	1.00[AMR][1000 genomes]
rs74146337	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149608	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149610	1.00[AMR][1000 genomes]
rs74149611	1.00[AMR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89462200-89494800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:89463000-89494600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:89466200-89494600	Weak transcription	A549	lung
6	chr10:89466800-89494600	Weak transcription	Hela-S3	cervix
7	chr10:89468600-89494000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:89470600-89493800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:89472400-89503000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:89473000-89577200	Weak transcription	Gastric	stomach
11	chr10:89473600-89494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:89473800-89493600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:89476000-89494600	Weak transcription	NHDF-Ad	bronchial
14	chr10:89476200-89494000	Weak transcription	Fetal Stomach	stomach
15	chr10:89476200-89494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
17	chr10:89476400-89494000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:89476400-89494800	Weak transcription	Spleen	Spleen
19	chr10:89476400-89504800	Weak transcription	Left Ventricle	heart
20	chr10:89477200-89494800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:89477400-89500000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:89478000-89494800	Weak transcription	Ovary	ovary
23	chr10:89483200-89503200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:89483600-89494600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:89483600-89494800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:89484000-89494000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:89484600-89494200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:89484600-89494200	Strong transcription	Osteobl	bone
29	chr10:89484800-89491800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:89486600-89494000	Strong transcription	Liver	Liver
31	chr10:89487200-89494000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:89487400-89503200	Weak transcription	Colonic Mucosa	Colon
33	chr10:89487600-89494800	Weak transcription	Placenta	Placenta
34	chr10:89487800-89492400	Weak transcription	NHLF	lung
35	chr10:89487800-89494600	Weak transcription	NH-A	brain
36	chr10:89488000-89494600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:89488000-89494600	Weak transcription	Fetal Lung	lung
38	chr10:89488000-89494800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:89488000-89501600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:89488200-89493800	Weak transcription	Adipose Nuclei	Adipose
41	chr10:89488600-89496600	Weak transcription	Lung	lung
42	chr10:89489200-89492400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:89489400-89494800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:89490000-89492600	Weak transcription	HUVEC	blood vessel
45	chr10:89490000-89499800	Weak transcription	Fetal Intestine Large	intestine
46	chr10:89490000-89503000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:89490200-89494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:89490200-89494600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:89490200-89494800	Weak transcription	Fetal Intestine Small	intestine
50	chr10:89490400-89492800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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