The 2.0 version of rSNPBase

Variant report

Variant rs56198886
Chromosome Location chr10:89528887-89528888
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:89463000-89541400 Weak transcription Rectal Smooth Muscle rectum
2 chr10:89473000-89577200 Weak transcription Gastric stomach
3 chr10:89476200-89542400 Weak transcription Pancreas Pancrea
4 chr10:89495000-89541400 Weak transcription Right Ventricle heart
5 chr10:89495000-89576400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr10:89495200-89530600 Weak transcription Brain Cingulate Gyrus brain
7 chr10:89495200-89542600 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr10:89495200-89544600 Weak transcription Brain Substantia Nigra brain
9 chr10:89495200-89559200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr10:89495200-89577400 Weak transcription Spleen Spleen
11 chr10:89498200-89541400 Weak transcription Aorta Aorta
12 chr10:89498800-89536200 Weak transcription Small Intestine intestine
13 chr10:89504200-89551800 Weak transcription Psoas Muscle Psoas
14 chr10:89507000-89557600 Weak transcription Lung lung
15 chr10:89510200-89553800 Weak transcription Esophagus oesophagus
16 chr10:89511000-89576800 Weak transcription Colonic Mucosa Colon
17 chr10:89512800-89560400 Weak transcription Fetal Brain Male brain
18 chr10:89513400-89577000 Weak transcription Placenta Amnion Placenta Amnion
19 chr10:89514600-89534600 Weak transcription Ovary ovary
20 chr10:89514600-89539800 Weak transcription Fetal Kidney kidney
21 chr10:89516000-89541200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr10:89516200-89535400 Weak transcription Brain Anterior Caudate brain
23 chr10:89516400-89541400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr10:89516400-89557800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr10:89518200-89556600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr10:89518400-89559000 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr10:89519000-89530800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr10:89520200-89542800 Weak transcription Stomach Smooth Muscle stomach
29 chr10:89520400-89535600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr10:89520400-89556400 Weak transcription Brain Germinal Matrix brain
31 chr10:89520600-89575600 Weak transcription Stomach Mucosa stomach
32 chr10:89520800-89529000 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr10:89521800-89540400 Weak transcription Thymus Thymus
34 chr10:89522200-89535200 Weak transcription Muscle Satellite Cultured Cells --
35 chr10:89522400-89535400 Weak transcription NHLF lung
36 chr10:89522600-89530400 Strong transcription GM12878-XiMat blood
37 chr10:89522600-89530800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr10:89523000-89530400 Strong transcription Breast Myoepithelial Primary Cells Breast
39 chr10:89523000-89530600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr10:89523000-89530600 Strong transcription Rectal Mucosa Donor 31 rectum
41 chr10:89523000-89530800 Strong transcription Primary T cells fromperipheralblood blood
42 chr10:89523000-89530800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr10:89523000-89531000 Strong transcription Primary T helper cells PMA-I stimulated --
44 chr10:89523000-89531400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr10:89523200-89530600 Strong transcription Duodenum Mucosa Duodenum
46 chr10:89523200-89531400 Strong transcription Primary B cells from peripheral blood blood
47 chr10:89523200-89553000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
48 chr10:89523400-89535400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr10:89523400-89562800 Weak transcription K562 blood
50 chr10:89523600-89530800 Strong transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015