Variant report
| Variant | rs12269911 |
|---|---|
| Chromosome Location | chr11:58106233-58106234 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:58098532..58100189-chr11:58104591..58107820,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11229357 | 1.00[AMR][1000 genomes] |
| rs12270150 | 1.00[AMR][1000 genomes] |
| rs12270849 | 1.00[AMR][1000 genomes] |
| rs12272726 | 1.00[AMR][1000 genomes] |
| rs12272891 | 1.00[AMR][1000 genomes] |
| rs12273004 | 1.00[AMR][1000 genomes] |
| rs12275654 | 1.00[AMR][1000 genomes] |
| rs12275822 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12280084 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12281618 | 1.00[AMR][1000 genomes] |
| rs12287850 | 1.00[AMR][1000 genomes] |
| rs12291817 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17152630 | 1.00[AMR][1000 genomes] |
| rs17152706 | 1.00[AMR][1000 genomes] |
| rs17152709 | 1.00[AMR][1000 genomes] |
| rs17152724 | 1.00[AMR][1000 genomes] |
| rs35053400 | 1.00[AMR][1000 genomes] |
| rs4586183 | 1.00[AMR][1000 genomes] |
| rs58922837 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7102202 | 1.00[AMR][1000 genomes] |
| rs7104914 | 1.00[AMR][1000 genomes] |
| rs7122860 | 1.00[AMR][1000 genomes] |
| rs754679 | 1.00[AMR][1000 genomes] |
| rs754680 | 1.00[AMR][1000 genomes] |
| rs7936746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7937507 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039453 | chr11:57924680-58119650 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv541051 | chr11:57924680-58119650 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58103000-58112800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
