Variant report

Variant	rs17152709
Chromosome Location	chr11:58267084-58267085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11229357	1.00[AMR][1000 genomes]
rs12269911	1.00[AMR][1000 genomes]
rs12270150	1.00[AMR][1000 genomes]
rs12270849	1.00[AMR][1000 genomes]
rs12272726	1.00[AMR][1000 genomes]
rs12272891	1.00[AMR][1000 genomes]
rs12273004	1.00[AMR][1000 genomes]
rs12275654	1.00[AMR][1000 genomes]
rs12275822	1.00[AMR][1000 genomes]
rs12280084	1.00[AMR][1000 genomes]
rs12281618	1.00[AMR][1000 genomes]
rs12287850	1.00[AMR][1000 genomes]
rs12291817	1.00[AMR][1000 genomes]
rs17145606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152630	1.00[AMR][1000 genomes]
rs17152706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152724	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	1.00[ASW][hapmap];1.00[MKK][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4586183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs58922837	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7102202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112500	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122860	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	1.00[AMR][1000 genomes]
rs7936746	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs7937507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:58263400-58267200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:58264400-58270600	Weak transcription	GM12878-XiMat	blood
4	chr11:58265400-58267200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr11:58266200-58268200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:58266200-58270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:58266800-58274800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:58266800-58278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:58266800-58278800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:58267000-58271000	Weak transcription	Primary T cells from cord blood	blood
11	chr11:58267000-58279600	Weak transcription	Primary T cells fromperipheralblood	blood

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