Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11229357	1.00[AMR][1000 genomes]
rs12269911	1.00[AMR][1000 genomes]
rs12270150	1.00[AMR][1000 genomes]
rs12270849	1.00[AMR][1000 genomes]
rs12272726	1.00[AMR][1000 genomes]
rs12272891	1.00[AMR][1000 genomes]
rs12273004	1.00[AMR][1000 genomes]
rs12275654	1.00[AMR][1000 genomes]
rs12275822	1.00[AMR][1000 genomes]
rs12280084	1.00[AMR][1000 genomes]
rs12281618	1.00[AMR][1000 genomes]
rs12287850	1.00[AMR][1000 genomes]
rs12291817	1.00[AMR][1000 genomes]
rs17145606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152630	1.00[AMR][1000 genomes]
rs17152706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152709	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152724	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152779	1.00[AMR][1000 genomes]
rs35053400	1.00[AMR][1000 genomes]
rs4586183	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs58922837	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7104914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112500	1.00[AMR][1000 genomes]
rs7122860	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	1.00[AMR][1000 genomes]
rs7936746	1.00[AMR][1000 genomes]
rs7937507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58252400-58265200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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