Variant report

Variant	rs12287850
Chromosome Location	chr11:58096768-58096769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11229357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269911	1.00[AMR][1000 genomes]
rs12270150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275654	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275822	1.00[AMR][1000 genomes]
rs12280084	1.00[AMR][1000 genomes]
rs12281618	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291817	1.00[AMR][1000 genomes]
rs17152630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152706	1.00[AMR][1000 genomes]
rs17152709	1.00[AMR][1000 genomes]
rs17152724	1.00[AMR][1000 genomes]
rs35053400	1.00[AMR][1000 genomes]
rs4586183	1.00[AMR][1000 genomes]
rs58922837	1.00[AMR][1000 genomes]
rs7102202	1.00[AMR][1000 genomes]
rs7104914	1.00[AMR][1000 genomes]
rs7122860	1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936746	1.00[AMR][1000 genomes]
rs7937507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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