Variant report

Variant	rs7936746
Chromosome Location	chr11:58086245-58086246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11229357	1.00[AMR][1000 genomes]
rs12269911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270150	1.00[AMR][1000 genomes]
rs12270849	1.00[AMR][1000 genomes]
rs12272726	1.00[AMR][1000 genomes]
rs12272891	1.00[AMR][1000 genomes]
rs12273004	1.00[AMR][1000 genomes]
rs12275654	1.00[AMR][1000 genomes]
rs12275822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281618	1.00[AMR][1000 genomes]
rs12287850	1.00[AMR][1000 genomes]
rs12291817	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152630	1.00[AMR][1000 genomes]
rs17152706	1.00[AMR][1000 genomes]
rs17152709	1.00[AMR][1000 genomes]
rs17152724	1.00[AMR][1000 genomes]
rs35053400	1.00[AMR][1000 genomes]
rs4586183	1.00[AMR][1000 genomes]
rs58922837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102202	1.00[AMR][1000 genomes]
rs7104914	1.00[AMR][1000 genomes]
rs7121641	0.92[YRI][hapmap]
rs7122860	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	1.00[AMR][1000 genomes]
rs7937507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58083200-58087400	Enhancers	NHLF	lung
2	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:58085200-58088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:58085600-58087000	Enhancers	NHDF-Ad	bronchial
5	chr11:58086000-58086600	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links