Variant report
| Variant | rs7121641 |
|---|---|
| Chromosome Location | chr11:58130048-58130049 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11229357 | 1.00[AMR][1000 genomes] |
| rs12269911 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12270150 | 1.00[AMR][1000 genomes] |
| rs12270849 | 1.00[AMR][1000 genomes] |
| rs12272726 | 1.00[AMR][1000 genomes] |
| rs12272891 | 1.00[AMR][1000 genomes] |
| rs12273004 | 1.00[AMR][1000 genomes] |
| rs12275654 | 1.00[AMR][1000 genomes] |
| rs12275822 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12280084 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12281618 | 1.00[AMR][1000 genomes] |
| rs12287850 | 1.00[AMR][1000 genomes] |
| rs12291817 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17145606 | 1.00[AMR][1000 genomes] |
| rs17152630 | 1.00[AMR][1000 genomes] |
| rs17152706 | 1.00[AMR][1000 genomes] |
| rs17152709 | 1.00[AMR][1000 genomes] |
| rs17152724 | 1.00[AMR][1000 genomes] |
| rs17152743 | 1.00[AMR][1000 genomes] |
| rs17152750 | 1.00[AMR][1000 genomes] |
| rs35053400 | 1.00[AMR][1000 genomes] |
| rs4586183 | 1.00[AMR][1000 genomes] |
| rs58922837 | 1.00[AMR][1000 genomes] |
| rs7102202 | 1.00[AMR][1000 genomes] |
| rs7104914 | 1.00[AMR][1000 genomes] |
| rs7122860 | 1.00[AMR][1000 genomes] |
| rs754679 | 1.00[AMR][1000 genomes] |
| rs754680 | 1.00[AMR][1000 genomes] |
| rs7936746 | 0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7937507 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
