Variant report

Variant	rs17145606
Chromosome Location	chr11:58351745-58351746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58346682..58349272-chr11:58349301..58352571,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17152706	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4586183	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7102202	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104914	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122860	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs7937507	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58360200	Weak transcription	Esophagus	oesophagus
2	chr11:58347600-58361400	Weak transcription	Gastric	stomach
3	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
4	chr11:58347600-58379800	Weak transcription	Lung	lung
5	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
8	chr11:58348200-58352800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
10	chr11:58348400-58351800	Enhancers	Colon Smooth Muscle	Colon
11	chr11:58348400-58352000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:58348400-58352200	Enhancers	Liver	Liver
13	chr11:58348600-58352400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr11:58348600-58352600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:58348600-58352800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:58348600-58360200	Weak transcription	Stomach Mucosa	stomach
17	chr11:58348800-58352000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:58348800-58352400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:58348800-58352600	Enhancers	Primary T cells from cord blood	blood
20	chr11:58348800-58354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:58349000-58352200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:58349000-58352200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:58349000-58352600	Weak transcription	Osteobl	bone
24	chr11:58349000-58352800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:58349000-58353000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr11:58349000-58358200	Weak transcription	Ovary	ovary
27	chr11:58349000-58359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:58349000-58359800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:58349000-58360000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:58349000-58360200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:58349200-58352600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:58349200-58352800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:58349200-58359200	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:58349200-58359200	Weak transcription	Fetal Stomach	stomach
35	chr11:58349200-58360200	Weak transcription	Left Ventricle	heart
36	chr11:58349200-58363200	Weak transcription	Brain Germinal Matrix	brain
37	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
38	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
39	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
40	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:58349400-58352000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:58349400-58352800	Weak transcription	Placenta	Placenta
44	chr11:58349400-58353000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:58349400-58353600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:58349400-58359200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:58349400-58360000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:58349400-58367600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:58349600-58351800	Enhancers	Brain Cingulate Gyrus	brain
50	chr11:58349600-58352000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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