Variant report

Variant	rs73472034
Chromosome Location	chr11:58447773-58447774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17145606	1.00[AMR][1000 genomes]
rs17152706	1.00[AMR][1000 genomes]
rs17152709	1.00[AMR][1000 genomes]
rs17152724	1.00[AMR][1000 genomes]
rs17152743	1.00[AMR][1000 genomes]
rs17152750	1.00[AMR][1000 genomes]
rs17152779	1.00[AMR][1000 genomes]
rs4586183	1.00[AMR][1000 genomes]
rs57786139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59106173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102202	1.00[AMR][1000 genomes]
rs7104914	1.00[AMR][1000 genomes]
rs7112500	1.00[AMR][1000 genomes]
rs7122860	1.00[AMR][1000 genomes]
rs73472031	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs7937507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58447000-58448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:58447400-58447800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:58447400-58447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:58447400-58448000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:58447600-58447800	ZNF genes & repeats	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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