Variant report

Variant	rs17152779
Chromosome Location	chr11:58391538-58391539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58390174..58392645-chr11:58393294..58395945,2	K562	blood:
2	chr11:58344628..58346130-chr11:58388841..58391574,2	MCF-7	breast:
3	chr11:58345286..58347963-chr11:58389614..58393452,3	MCF-7	breast:
4	chr11:58391033..58393588-chr11:58395119..58397288,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110031	Chromatin interaction
ENSG00000255073	Chromatin interaction
ENSG00000186660	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17145606	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152706	1.00[AMR][1000 genomes]
rs17152709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152724	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4586183	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7102202	1.00[AMR][1000 genomes]
rs7104914	1.00[AMR][1000 genomes]
rs7112500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122860	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs7937507	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58363000-58393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:58376600-58391800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:58376600-58395800	Strong transcription	Fetal Thymus	thymus
4	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:58376800-58391600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:58376800-58393200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr11:58376800-58395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:58376800-58395600	Strong transcription	Dnd41	blood
9	chr11:58377000-58391600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:58377000-58394600	Strong transcription	K562	blood
11	chr11:58377200-58393000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:58377200-58393800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:58377200-58393800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:58377200-58394000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:58377200-58394000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:58377200-58394000	Strong transcription	Liver	Liver
17	chr11:58377200-58394000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr11:58377200-58394400	Strong transcription	A549	lung
19	chr11:58377200-58394600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr11:58377200-58394800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:58377200-58394800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr11:58377200-58397200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:58377400-58393600	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr11:58377400-58394600	Strong transcription	Primary hematopoietic stem cells	blood
25	chr11:58377400-58394600	Strong transcription	Fetal Intestine Large	intestine
26	chr11:58377400-58394800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:58377400-58394800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr11:58377400-58395200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:58377600-58395200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:58377800-58393800	Strong transcription	Primary B cells from cord blood	blood
31	chr11:58378000-58392800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:58378400-58392600	Strong transcription	Fetal Lung	lung
33	chr11:58379000-58393600	Strong transcription	Hela-S3	cervix
34	chr11:58379000-58394600	Strong transcription	Fetal Muscle Leg	muscle
35	chr11:58381400-58395000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:58384200-58393800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:58385200-58391600	Weak transcription	Stomach Mucosa	stomach
38	chr11:58385200-58394200	Strong transcription	Placenta	Placenta
39	chr11:58385200-58397000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:58385400-58391800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:58385600-58400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:58386800-58400000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:58388000-58394400	Weak transcription	Fetal Heart	heart
44	chr11:58388400-58392600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:58388600-58395200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:58388800-58391600	Weak transcription	HUVEC	blood vessel
47	chr11:58388800-58394600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr11:58389200-58392000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:58389200-58392800	Strong transcription	Lung	lung
50	chr11:58389200-58393800	Strong transcription	Adipose Nuclei	Adipose

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