Variant report

Variant	rs7937507
Chromosome Location	chr11:58266103-58266104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11229357	1.00[AMR][1000 genomes]
rs12269911	1.00[AMR][1000 genomes]
rs12270150	1.00[AMR][1000 genomes]
rs12270849	1.00[AMR][1000 genomes]
rs12272726	1.00[AMR][1000 genomes]
rs12272891	1.00[AMR][1000 genomes]
rs12273004	1.00[AMR][1000 genomes]
rs12275654	1.00[AMR][1000 genomes]
rs12275822	1.00[AMR][1000 genomes]
rs12280084	1.00[AMR][1000 genomes]
rs12281618	1.00[AMR][1000 genomes]
rs12287850	1.00[AMR][1000 genomes]
rs12291817	1.00[AMR][1000 genomes]
rs17145606	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152630	1.00[AMR][1000 genomes]
rs17152706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152724	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152743	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152750	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17152779	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4586183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786139	1.00[AMR][1000 genomes]
rs58922837	1.00[AMR][1000 genomes]
rs59106173	1.00[AMR][1000 genomes]
rs7102202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112500	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7122860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472031	1.00[AMR][1000 genomes]
rs73472034	1.00[AMR][1000 genomes]
rs73472049	1.00[AMR][1000 genomes]
rs754679	1.00[AMR][1000 genomes]
rs754680	1.00[AMR][1000 genomes]
rs7936746	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:58263400-58267200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:58264400-58270600	Weak transcription	GM12878-XiMat	blood
4	chr11:58264600-58266600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr11:58265000-58267000	Enhancers	Primary T cells from cord blood	blood
6	chr11:58265200-58266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:58265400-58266200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:58265400-58266200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:58265400-58266200	Enhancers	Thymus	Thymus
10	chr11:58265400-58266200	Enhancers	HMEC	breast
11	chr11:58265400-58266200	Enhancers	NHEK	skin
12	chr11:58265400-58266400	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:58265400-58266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:58265400-58266800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:58265400-58266800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:58265400-58266800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:58265400-58266800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:58265400-58267000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:58265400-58267000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:58265400-58267200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr11:58265600-58266200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:58265600-58266400	Enhancers	Dnd41	blood
23	chr11:58265600-58266800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr11:58265800-58266200	Enhancers	HSMMtube	muscle
25	chr11:58265800-58266600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:58265800-58267000	Enhancers	Primary monocytes fromperipheralblood	blood

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